Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDS05903.1Hypothetical protein; KEGG: bce:BC1788 7.0e-60 lysophospholipase L2 K01048; COG: COG2267 Lysophospholipase; Psort location: Cytoplasmic, score: 8.87. (312 aa)    
Predicted Functional Partners:
hndC_3
4Fe-4S binding domain protein; KEGG: swo:Swol_1701 3.0e-194 NADH dehydrogenase (quinone) K05903; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.946
hndD_3
4Fe-4S binding domain protein; KEGG: chy:CHY_0733 7.8e-24 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing K00123; COG: COG3383 Uncharacterized anaerobic dehydrogenase; Psort location: CytoplasmicMembrane, score: 7.80.
   
 
 0.821
baiE
KEGG: msm:MSMEG_2245 1.9e-11 bile-acid 7-alpha dehydratase; COG: NOG20037 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   0.788
PrpC2
KEGG: lla:L67186 6.4e-137 gltA; citrate synthase K01647; COG: COG0372 Citrate synthase; Psort location: Cytoplasmic, score: 9.98.
     
 0.781
sfrB_1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cte:CT0282 6.4e-82 glutamate synthase (NADPH) small chain K00266; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.643
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.642
hndC_1
4Fe-4S binding domain protein; KEGG: tte:TTE0893 3.3e-243 nuoF; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.636
EDS05900.1
Hypothetical protein.
       0.613
EDS05904.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bpm:BURPS1710b_A0944 5.9e-40 short chain dehydrogenase K00079; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
   
 
 0.574
ycfH
Hydrolase, TatD family; KEGG: bli:BL00532 1.1e-63 yabD; TatD-related deoxyribonuclease K03424; COG: COG0084 Mg-dependent DNase; Psort location: Cytoplasmic, score: 8.87.
       0.571
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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