close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqcECOG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00. (413 aa)    
Predicted Functional Partners:
EDS06387.1
Hypothetical protein; KEGG: eci:UTI89_C4465 3.7e-06 putative dehydrogenase K00001; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
    0.677
EDS05674.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.556
lsrK
Carbohydrate kinase, FGGY family protein; KEGG: abo:ABO_1407 2.8e-56 sugar kinase, putative K00924; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
     0.490
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.