STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_2Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bcl:ABC1175 6.0e-47 D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: CytoplasmicMembrane, score: 9.87; Belongs to the peptidase S11 family. (324 aa)    
Predicted Functional Partners:
walK_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bcz:BCZK4604 1.8e-47 vanS; sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
  
  
 0.586
phoP_3
Response regulator receiver domain protein; KEGG: ava:Ava_3369 6.5e-41 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
  
    0.575
spmA
COG: COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.413
spmB
Transporter gate domain protein; COG: COG0700 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.413
EDS05688.1
Hypothetical protein.
       0.412
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.