STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icaRTranscriptional regulator, TetR family; COG: NOG38831 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (191 aa)    
Predicted Functional Partners:
EDS05694.1
COG: COG4905 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.661
EDS05692.1
Metallo-beta-lactamase family protein; KEGG: hch:HCH_02525 0.00021 Zn-dependent hydrolase, including glyoxylases K01069; COG: COG0491 Zn-dependent hydrolases, including glyoxylases.
  
  
 0.637
EDS05691.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.636
EDS08066.1
Hypothetical protein; COG: NOG14690 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.582
EDS07438.1
Hypothetical protein; COG: NOG23664 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.510
hadI
Putative CoA-substrate-specific enzyme activase; KEGG: eci:UTI89_C5044 1.6e-18 yjiL; hypothetical protein YjiL K04111; COG: COG3580 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.459
EDS05696.1
Transporter, major facilitator family protein; KEGG: cjr:CJE1016 5.5e-10 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase K05939:K01909; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.448
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
  
   
 0.422
MshD
Acetyltransferase, GNAT family; KEGG: mka:MK0549 3.2e-07 acetyltransferase K03789; COG: NOG36299 non supervised orthologous group.
  
     0.412
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.