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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05694.1COG: COG4905 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (609 aa)    
Predicted Functional Partners:
icaR
Transcriptional regulator, TetR family; COG: NOG38831 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.661
EDS06033.1
Hypothetical protein; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
     0.571
EDS05691.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.548
EDS05692.1
Metallo-beta-lactamase family protein; KEGG: hch:HCH_02525 0.00021 Zn-dependent hydrolase, including glyoxylases K01069; COG: COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.548
EDS04857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.526
EDS05696.1
Transporter, major facilitator family protein; KEGG: cjr:CJE1016 5.5e-10 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase K05939:K01909; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.487
EDS06742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.485
EDS04858.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.480
EDS07825.1
Amidohydrolase family protein; COG: NOG27356 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.454
EDS05695.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.439
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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