Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05696.1Transporter, major facilitator family protein; KEGG: cjr:CJE1016 5.5e-10 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase K05939:K01909; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 9.99. (415 aa)    
Predicted Functional Partners:
TtgR
Transcriptional regulator, TetR family; KEGG: bcl:ABC2937 0.0030 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.802
EDS05695.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.678
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.595
EDS05453.1
Hypothetical protein; COG: NOG30793 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.519
EDS05454.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.495
EDS05694.1
COG: COG4905 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.487
FruA
KEGG: cpr:CPR_0550 3.4e-163 fructose specific permease K00890; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score: 10.00.
    
 
 0.465
icaR
Transcriptional regulator, TetR family; COG: NOG38831 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.441
EDS05682.1
Hypothetical protein; KEGG: cal:orf19.6148 3.1e-05 USO2; intracellular protein transport K01553; COG: COG0845 Membrane-fusion protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.439
petC1
FAD dependent oxidoreductase; KEGG: mma:MM1656 6.2e-84 oxidoreductase K00100; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
  
  
 0.413
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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