STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05708.1CRISPR-associated RAMP protein; COG: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); Psort location: Cytoplasmic, score: 8.87. (228 aa)    
Predicted Functional Partners:
EDS05705.1
Hypothetical protein; COG: COG5551 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.888
EDS05710.1
Hypothetical protein.
 
     0.873
EDS05707.1
Putative CRISPR-associated RAMP protein, Csm4 family; Psort location: Cytoplasmic, score: 8.87.
       0.781
EDS05706.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.780
EDS05709.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.733
EDS08542.1
Hypothetical protein; COG: COG3481 Predicted HD-superfamily hydrolase.
  
     0.571
XerC_5
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.493
EDS05711.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.485
EDS06739.1
Hypothetical protein; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type.
  
     0.472
ecfT_2
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.437
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.