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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05710.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
thiS
COG: COG2104 Sulfur transfer protein involved in thiamine biosynthesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.982
EDS05708.1
CRISPR-associated RAMP protein; COG: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); Psort location: Cytoplasmic, score: 8.87.
 
     0.873
EDS05705.1
Hypothetical protein; COG: COG5551 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.826
EDS05709.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.792
EDS05436.1
ThiS family protein; COG: COG1977 Molybdopterin converting factor, small subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.753
EDS05706.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.715
EDS05707.1
Putative CRISPR-associated RAMP protein, Csm4 family; Psort location: Cytoplasmic, score: 8.87.
       0.715
thiG
Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.699
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
  
  
 0.625
thiD
KEGG: cac:CAC3095 7.9e-84 thiK; phosphomethylpyrimidine kinase K00877:K00941; COG: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.600
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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