STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05722.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (155 aa)    
Predicted Functional Partners:
EDS05721.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.692
EDS05723.1
HNH endonuclease domain protein; KEGG: eco:b1159 1.2e-18 mcrA, rglA, ponA; e14 prophage; restriction of DNA at 5-methylcytosine residues K07451; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87.
 
     0.609
EDS08038.1
Hypothetical protein; KEGG: reh:H16_B1607 0.0014 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
  
    0.471
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.