Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05726.1Plasmid recombination enzyme; KEGG: pho:PH0134 1.1e-07 hypothetical protein K01079; COG: COG5022 Myosin heavy chain; Psort location: Cytoplasmic, score: 8.87. (484 aa)    
Predicted Functional Partners:
EDS05725.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.741
xis
Hypothetical protein.
 
     0.599
EDS08772.1
Hypothetical protein; COG: NOG20173 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.574
EDS05728.1
Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.543
EDS08803.1
Hypothetical protein; KEGG: bme:BMEI1837 0.00077 cellobiose-phosphorylase K00702; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cytoplasmic, score: 8.87.
 
     0.537
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.533
EDS05730.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.495
lanM
Type 2 lantibiotic biosynthesis protein LanM; COG: COG4403 Lantibiotic modifying enzyme; Psort location: Cytoplasmic, score: 8.87.
  
    0.493
EDS05724.1
Hypothetical protein; COG: NOG15747 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.492
EDS08296.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.475
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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