STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05728.1Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (336 aa)    
Predicted Functional Partners:
EDS06204.1
Toprim domain protein; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
    
 0.868
xis
Hypothetical protein.
 
     0.692
EDS05730.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.626
EDS05727.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.611
EDS05726.1
Plasmid recombination enzyme; KEGG: pho:PH0134 1.1e-07 hypothetical protein K01079; COG: COG5022 Myosin heavy chain; Psort location: Cytoplasmic, score: 8.87.
 
     0.544
EDS05729.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.530
EDS08819.1
Virulence-associated protein E; COG: COG5545 Predicted P-loop ATPase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
    0.480
EDS06249.1
DNA binding domain, excisionase family.
 
   
 0.451
EDS06251.1
DNA binding domain, excisionase family.
 
   
 0.438
EDS06046.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
  
     0.424
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.