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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05729.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (121 aa)    
Predicted Functional Partners:
EDS05730.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
       0.777
xis
Hypothetical protein.
       0.771
EDS05728.1
Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.530
EDS05732.1
DNA-binding helix-turn-helix protein.
       0.508
EDS05733.1
Hypothetical protein; KEGG: ssp:SSP0634 0.0034 putative ABC-type sulfate molybdate transport system ATPase component K02017; COG: NOG17352 non supervised orthologous group.
       0.487
EDS05727.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.400
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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