Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xisHypothetical protein. (62 aa)    
Predicted Functional Partners:
EDS05730.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.941
EDS05729.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.774
EDS05728.1
Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.687
EDS05732.1
DNA-binding helix-turn-helix protein.
 
     0.640
EDS05726.1
Plasmid recombination enzyme; KEGG: pho:PH0134 1.1e-07 hypothetical protein K01079; COG: COG5022 Myosin heavy chain; Psort location: Cytoplasmic, score: 8.87.
 
     0.599
EDS05733.1
Hypothetical protein; KEGG: ssp:SSP0634 0.0034 putative ABC-type sulfate molybdate transport system ATPase component K02017; COG: NOG17352 non supervised orthologous group.
       0.496
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.489
EDS05727.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.449
EDS06216.1
Hypothetical protein.
  
    0.441
EDS07937.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.431
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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