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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywiBCOG: COG4506 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (148 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
    0.849
argS
arginine--tRNA ligase; KEGG: fth:FTH_1544 4.9e-139 argS; arginine--tRNA ligase K01887; COG: COG0018 Arginyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.98.
  
    0.731
EDS05758.1
LysM domain protein; KEGG: oih:OB0220 0.0012 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
 
     0.559
hemZ
KEGG: cpe:CPE1935 9.2e-90 hemZ; probable coproporphyrinogen III oxidase K02495; COG: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
   
    0.538
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
       0.505
EDS07093.1
Hypothetical protein; COG: NOG13733 non supervised orthologous group.
  
     0.462
psd
KEGG: cac:CAC0799 6.4e-50 psd; phosphatidylserine decarboxylase K01613; COG: COG0688 Phosphatidylserine decarboxylase; Psort location: Cytoplasmic, score: 8.87.
   
    0.451
EDS08144.1
Hypothetical protein; KEGG: ctc:CTC00993 0.0038 V-type sodium ATP synthase subunit G K02121; COG: NOG13209 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.425
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
    0.418
EDS07567.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.401
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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