STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspR_1FCD domain protein; KEGG: msm:MSMEG_3400 2.5e-17 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (226 aa)    
Predicted Functional Partners:
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.789
EDS05758.1
LysM domain protein; KEGG: oih:OB0220 0.0012 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
       0.683
EDS05759.1
Hypothetical protein.
       0.658
spoIIR
Stage II sporulation protein R; COG: NOG13215 non supervised orthologous group.
       0.608
EDS05753.1
Acyl-ACP thioesterase; KEGG: ctc:CTC00119 2.9e-22 acyl-acyl carrier protein thioesterase K01071; COG: COG3884 Acyl-ACP thioesterase; Psort location: Cytoplasmic, score: 8.87.
       0.586
FieF
Cation diffusion facilitator family transporter; KEGG: mja:MJ0449 4.1e-32 cation efflux system protein K01529; COG: COG0053 Predicted Co/Zn/Cd cation transporters; Psort location: CytoplasmicMembrane, score: 7.63; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.586
cvfB
S1 RNA binding domain protein; COG: COG2996 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87; Belongs to the CvfB family.
  
    0.530
malQ-2
4-alpha-glucanotransferase; KEGG: syn:sll1676 9.4e-136 malQ; 4-alpha-glucanotransferase K00705; COG: COG1640 4-alpha-glucanotransferase; Psort location: Cytoplasmic, score: 9.98.
       0.469
EDS05751.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.431
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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