Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDS05762.1Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF0455 1.4e-95 noxB-1; NADH oxidase (NoxB-1) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87. (661 aa)    
Predicted Functional Partners:
baiE
KEGG: msm:MSMEG_2245 1.9e-11 bile-acid 7-alpha dehydratase; COG: NOG20037 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.878
bmr3_1
Transporter, major facilitator family protein; KEGG: shn:Shewana3_1692 7.9e-07 Xaa-His dipeptidase K01270; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.862
baiF
Bile acid-CoA hydrolase; KEGG: ecs:ECs0041 1.2e-66 crotonobetainyl-CoA:carnitine CoA-transferase K08298; COG: COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Psort location: Cytoplasmic, score: 9.98; Belongs to the CoA-transferase III family.
 
   
 0.829
urdA
FAD binding domain protein; KEGG: ctc:CTC01488 1.6e-55 fumarate reductase flavoprotein subunit K00244; COG: COG3976 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.815
baiA-2
Bile acid 7-dehydroxylase 1/3; KEGG: cpr:CPR_0991 9.8e-54 7-alpha-hydroxysteroid dehydrogenase K00076; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.703
carD_2
COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.692
EtfB
COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.692
carD_1
COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.692
BaiB
AMP-binding enzyme; KEGG: hne:HNE_0099 1.1e-68 baiB; bile acid-coenzyme A ligase; COG: COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; Psort location: Cytoplasmic, score: 9.96.
 
   
 0.683
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.678
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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