Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
baiEKEGG: msm:MSMEG_2245 1.9e-11 bile-acid 7-alpha dehydratase; COG: NOG20037 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (169 aa)    
Predicted Functional Partners:
hndC_3
4Fe-4S binding domain protein; KEGG: swo:Swol_1701 3.0e-194 NADH dehydrogenase (quinone) K05903; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
  
 0.995
hndD_3
4Fe-4S binding domain protein; KEGG: chy:CHY_0733 7.8e-24 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing K00123; COG: COG3383 Uncharacterized anaerobic dehydrogenase; Psort location: CytoplasmicMembrane, score: 7.80.
   
 0.970
BaiB
AMP-binding enzyme; KEGG: hne:HNE_0099 1.1e-68 baiB; bile acid-coenzyme A ligase; COG: COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; Psort location: Cytoplasmic, score: 9.96.
 
 
 
 0.939
petC1
FAD dependent oxidoreductase; KEGG: mma:MM1656 6.2e-84 oxidoreductase K00100; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
  
 
 0.931
urdA
FAD binding domain protein; KEGG: ctc:CTC01488 1.6e-55 fumarate reductase flavoprotein subunit K00244; COG: COG3976 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.930
EDS05767.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF1262 4.9e-84 noxB-2; NADH oxidase (NoxB-2) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.914
sfrB_1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cte:CT0282 6.4e-82 glutamate synthase (NADPH) small chain K00266; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
  
 0.887
EDS05762.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF0455 1.4e-95 noxB-1; NADH oxidase (NoxB-1) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.878
baiF
Bile acid-CoA hydrolase; KEGG: ecs:ECs0041 1.2e-66 crotonobetainyl-CoA:carnitine CoA-transferase K08298; COG: COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Psort location: Cytoplasmic, score: 9.98; Belongs to the CoA-transferase III family.
 
  
 0.878
hndC_1
4Fe-4S binding domain protein; KEGG: tte:TTE0893 3.3e-243 nuoF; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
  
 0.876
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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