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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxeNKEGG: hpa:HPAG1_0922 1.9e-27 amino acid ABC transporter, permease protein; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Psort location: CytoplasmicMembrane, score: 10.00. (221 aa)    
Predicted Functional Partners:
yxeO_1
ABC transporter, ATP-binding protein; KEGG: cpe:CPE2092 1.5e-75 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 0.994
yxeM
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 1.1e-24 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.993
glnH
ABC transporter, substrate-binding protein, family 3; KEGG: bur:Bcep18194_A4695 9.9e-22 ABC polar amino acid transporter, periplasmic ligand binding protein K01713; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.981
artP
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 5.4e-30 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.981
yxeO_2
ABC transporter, ATP-binding protein; KEGG: cac:CAC0879 2.8e-72 ABC-type polar amino acid transport system, ATPase component K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 0.980
artM
KEGG: lin:lin0841 5.9e-95 similar to amino acid ABC transporter, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.904
glnQ_1
ABC transporter, ATP-binding protein; KEGG: cpe:CPE0602 2.9e-86 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.904
tcyC
ABC transporter, ATP-binding protein; KEGG: mst:Msp_0958 4.3e-92 predicted ABC-type polar amino acid transport system, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.903
fliY
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 6.1e-22 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
 0.838
EDS05780.1
Hypothetical protein; KEGG: bsu:BG12445 0.0024 yvfT; two-component sensor histidine kinase. potential cognate response regulator is YvfU K02480.
       0.714
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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