Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDS05808.1Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component. (400 aa)    
Predicted Functional Partners:
rbsB_3
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
  
  0.966
alsB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
  
  0.927
yphF
Hypothetical protein; KEGG: msm:MSMEG_6020 6.8e-08 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
  
  0.920
rbsC
KEGG: msm:MSMEG_4171 1.6e-55 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.916
rbsC_3
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 2.9e-61 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.916
MglA_2
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.9e-121 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.899
rbsA_1
ABC transporter, ATP-binding protein; KEGG: tfu:Tfu_1921 2.3e-54 ABC-type sugar transport system ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.896
cckA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ret:RHE_CH02326 3.0e-25 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.817
EDS04944.1
Hypothetical protein; KEGG: rle:RL2226 0.0022 cdsA; putative phosphatidate cytidylyltransferase K00981; COG: NOG07239 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.699
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.666
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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