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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEKEGG: bsu:BG11837 1.3e-124 galE; UDP-glucose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (339 aa)    
Predicted Functional Partners:
galT
UTP--hexose-1-phosphate uridylyltransferase; KEGG: cac:CAC2961 1.4e-150 galT; galactose-1-phosphate uridyltransferase K00964; COG: COG4468 Galactose-1-phosphate uridyltransferase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.973
glf
KEGG: msu:MS0661 1.3e-145 glf; UDP-galactopyranose mutase K01854; COG: COG0562 UDP-galactopyranose mutase; Psort location: Cytoplasmic, score: 8.87.
    
 0.916
galE_2
Hypothetical protein; KEGG: cac:CAC2960 1.8e-55 galE; UDP-galactose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase.
  
  
 
0.912
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.863
nahK
Hypothetical protein; COG: NOG04719 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
     
 0.780
EDS05817.1
Hypothetical protein; KEGG: hma:rrnAC1081 0.00016 rffH1; glucose-1-phosphate thymidylyltransferase K00973; COG: NOG09722 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
     
 0.780
Mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.756
sugB_2
KEGG: ava:Ava_0243 3.5e-05 molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.628
araP_1
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.598
epsJ_3
Glycosyltransferase, group 2 family protein; KEGG: bce:BC5429 1.2e-27 beta-1,3-N-acetylglucosaminyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.580
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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