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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05833.1Hypothetical protein; KEGG: chy:CHY_0701 0.00081 sdhA1; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752; COG: COG3681 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 9.98; Belongs to the UPF0597 family. (427 aa)    
Predicted Functional Partners:
EDS05831.1
COG: COG4481 Uncharacterized protein conserved in bacteria.
       0.773
srtB-4
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
       0.773
EDS05834.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.563
EDS05837.1
Hypothetical protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
 
     0.513
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.494
ssb_1
KEGG: shn:Shewana3_3590 3.8e-13 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
       0.460
EDS05835.1
Hypothetical protein; COG: NOG23778 non supervised orthologous group.
       0.419
dnaJ_2
DnaJ domain protein; KEGG: cya:CYA_0373 0.00021 serine/threonine protein kinase K00924; COG: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; Psort location: Cytoplasmic, score: 9.65.
       0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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