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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05838.1Amidohydrolase family protein; COG: COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold; Psort location: Cytoplasmic, score: 8.87. (137 aa)    
Predicted Functional Partners:
mecR1
Hypothetical protein; KEGG: cph:Cpha266_1596 4.7e-08 beta-lactamase K01467; COG: COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.
 
    0.672
EDS07710.1
Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.660
EDS06845.1
Hypothetical protein; COG: NOG30389 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.519
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.516
EDS06557.1
ADP-ribosylglycohydrolase; KEGG: lmo:lmo2786 4.3e-28 bvrC; hypothetical protein K05521; COG: COG1397 ADP-ribosylglycohydrolase; Psort location: Cytoplasmic, score: 8.87.
  
     0.504
hemE_3
Hypothetical protein; KEGG: mmp:MMP0831 4.3e-16 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.468
EDS06392.1
Hypothetical protein; KEGG: spn:SP_0187 2.1e-07 peptidase M24 family protein K01262; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
  
    0.459
EDS07200.1
Hypothetical protein; KEGG: rha:RHA1_ro04508 4.5e-05 atzB; hydroxydechloroatrazine ethylaminohydrolase K03382; COG: COG1228 Imidazolonepropionase and related amidohydrolases.
 
   
 0.454
draG_1
ADP-ribosylglycohydrolase; KEGG: sdy:SDY_2272 9.4e-33 hypothetical protein K05521; COG: COG1397 ADP-ribosylglycohydrolase; Psort location: Cytoplasmic, score: 8.87.
  
     0.453
putR
Hypothetical protein; KEGG: shn:Shewana3_2682 0.0042 transcriptional regulator, CdaR K01694; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.421
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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