Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05841.1Hypothetical protein; COG: NOG18663 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (212 aa)    
Predicted Functional Partners:
EDS06089.1
Hypothetical protein; KEGG: sat:SYN_00363 1.7e-35 glutamate synthase [NADPH] small chain K00264; COG: COG0247 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.754
EDS05398.1
Hypothetical protein; KEGG: sat:SYN_00363 2.6e-20 glutamate synthase [NADPH] small chain K00264; COG: COG0247 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.754
putR
Hypothetical protein; KEGG: shn:Shewana3_2682 0.0042 transcriptional regulator, CdaR K01694; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87.
       0.555
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.526
Gph_3
Putative phosphoglycolate phosphatase, bacterial; KEGG: tde:TDE2716 3.7e-47 HAD-superfamily hydrolase, subfamily IA K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
 
      0.524
EDS05843.1
Hypothetical protein.
       0.484
EDS08476.1
Cupin domain protein; KEGG: gka:GK3304 0.0031 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809; COG: COG0662 Mannose-6-phosphate isomerase.
  
     0.434
EDS05840.1
Cupin domain protein; COG: COG0662 Mannose-6-phosphate isomerase; Psort location: Cytoplasmic, score: 8.87.
       0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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