STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
putRHypothetical protein; KEGG: shn:Shewana3_2682 0.0042 transcriptional regulator, CdaR K01694; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87. (379 aa)    
Predicted Functional Partners:
EDS05843.1
Hypothetical protein.
       0.668
EDS07710.1
Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.561
EDS05841.1
Hypothetical protein; COG: NOG18663 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.555
EDS08022.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.549
EDS08576.1
Hypothetical protein; KEGG: cpf:CPF_1123 1.3e-16 cell wall-associated serine proteinase K01361; COG: NOG17334 non supervised orthologous group.
  
     0.486
EDS04931.1
Transcriptional regulator, RpiR family; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.482
EDS05844.1
Hypothetical protein; KEGG: fra:Francci3_3129 0.0094 cobalbumin biosynthesis enzyme K02231; COG: COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II; Psort location: Cytoplasmic, score: 8.87.
       0.481
EDS05838.1
Amidohydrolase family protein; COG: COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold; Psort location: Cytoplasmic, score: 8.87.
  
     0.421
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.417
ydiM
COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.412
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.