STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05845.1Hypothetical protein; KEGG: bba:Bd3704 2.5e-17 putative zinc metallo protease; COG: COG1451 Predicted metal-dependent hydrolase; Psort location: Cytoplasmic, score: 8.87. (182 aa)    
Predicted Functional Partners:
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.800
hsdM
KEGG: tde:TDE0369 2.0e-245 hsdM-1; type I restriction-modification system, M subunit K03427; COG: COG0286 Type I restriction-modification system methyltransferase subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.733
EDS05383.1
Type I restriction modification DNA specificity domain protein; KEGG: mba:Mbar_A1015 3.5e-42 putative type I restriction enzyme, S subunit K01154; COG: COG0732 Restriction endonuclease S subunits.
 
    0.714
araQ_2
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
       0.605
msmF
Transmembrane permease MsmF; KEGG: hpa:HPAG1_0451 1.3e-05 molybdenum ABC transporter ModB K06022; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.605
lipO
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 2.7e-07 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
       0.476
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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