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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05572.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
EDS05573.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
 
     0.934
EDS05575.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.856
EDS05574.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
 
     0.803
EDS08784.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.779
EDS08802.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.777
EDS05218.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
     0.763
EDS08782.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components.
 
     0.761
EDS05282.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.761
EDS06191.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.759
traG
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
     0.752
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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