STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05575.1Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87. (812 aa)    
Predicted Functional Partners:
EDS05574.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
     0.953
EDS05573.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
 
   
 0.879
EDS05577.1
Hypothetical protein; KEGG: nme:NMB0700 1.1e-09 IgA-specific serine endopeptidase K01347; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
 0.863
EDS05579.1
LPXTG-motif cell wall anchor domain protein; COG: NOG36404 non supervised orthologous group.
 
     0.861
EDS05572.1
Hypothetical protein.
 
     0.856
yhdJ_2
KEGG: sth:STH334 7.3e-65 DNA modification methylase M.SthI K07319; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.816
EDS05218.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
  
 0.794
traG
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
  
 0.793
EDS06191.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.793
EDS05282.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.793
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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