Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05587.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
EDS05583.1
Antirestriction protein ArdA; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.923
EDS05586.1
Hypothetical protein.
 
     0.920
EDS05585.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.893
EDS05578.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.680
EDS08775.1
Hypothetical protein.
 
     0.642
EDS07617.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.599
EDS05579.1
LPXTG-motif cell wall anchor domain protein; COG: NOG36404 non supervised orthologous group.
 
     0.599
EDS08779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.590
EDS06193.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.581
EDS05584.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.572
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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