Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05589.1Hypothetical protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87. (312 aa)    
Predicted Functional Partners:
EDS05592.1
Hypothetical protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
     0.980
EDS08769.1
Hypothetical protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.975
EDS05593.1
Bacterial mobilization protein MobC; COG: NOG22231 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.820
EDS08768.1
Bacterial mobilization protein MobC; KEGG: dre:557560 0.0071 LOC557560; novel protein similar to rho-associated, coiled-coil containing protein kinase 2 (rock2) K04514; COG: NOG22231 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.773
EDS05583.1
Antirestriction protein ArdA; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.769
EDS05579.1
LPXTG-motif cell wall anchor domain protein; COG: NOG36404 non supervised orthologous group.
  
     0.766
EDS05577.1
Hypothetical protein; KEGG: nme:NMB0700 1.1e-09 IgA-specific serine endopeptidase K01347; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
     0.762
EDS08778.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.761
EDS05586.1
Hypothetical protein.
  
     0.761
EDS08780.1
Hypothetical protein; KEGG: pca:Pcar_2039 0.00092 ribonuclease, Rne/Rng family protein; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Cytoplasmic, score: 8.87.
 
     0.760
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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