STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrePlasmid recombination enzyme; COG: NOG17369 non supervised orthologous group. (365 aa)    
Predicted Functional Partners:
spo0C_1
ParB-like protein; KEGG: pub:SAR11_0354 2.2e-10 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
 
   
 0.947
EDS05603.1
COG: COG4443 Uncharacterized protein conserved in bacteria.
 
     0.891
EDS05601.1
Hypothetical protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
     0.872
EDS05607.1
Hypothetical protein; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.854
EDS05610.1
RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.824
EDS05611.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.778
tnpX-2
COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.776
EDS05615.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.752
cysE
KEGG: gka:GK0084 1.1e-63 serine O-acetyltransferase K00640; COG: COG1045 Serine acetyltransferase; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.744
EDS06240.1
Sigma-70, region 4.
  
  
 0.735
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.