STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05616.1N-6 DNA Methylase; KEGG: chu:CHU_1468 6.8e-12 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87. (2488 aa)    
Predicted Functional Partners:
EDS06198.1
Hypothetical protein; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87.
     0.977
EDS05619.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.909
EDS05618.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.901
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.818
EDS06204.1
Toprim domain protein; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.808
spo0C_2
ParB-like protein; KEGG: pub:SAR11_0354 5.1e-05 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
 
    0.807
EDS05615.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.803
EDS06217.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.785
EDS05617.1
Hypothetical protein.
       0.777
hsdS
KEGG: dde:Dde_2496 4.1e-48 subunit S of type I restriction-modification system K01154; COG: COG0732 Restriction endonuclease S subunits; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.775
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.