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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05619.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (201 aa)    
Predicted Functional Partners:
EDS05618.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.957
EDS05616.1
N-6 DNA Methylase; KEGG: chu:CHU_1468 6.8e-12 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87.
 
     0.909
EDS05622.1
LPXTG-motif cell wall anchor domain protein; KEGG: mmr:Mmar10_2493 0.0012 serralysin K01406; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.98.
 
     0.807
EDS05621.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.798
EDS05617.1
Hypothetical protein.
       0.790
EDS06204.1
Toprim domain protein; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.787
EDS05620.1
Hypothetical protein.
       0.773
EDS06209.1
Hypothetical protein; COG: NOG17367 non supervised orthologous group.
 
     0.767
EDS06208.1
Hypothetical protein; KEGG: pca:Pcar_2039 3.4e-05 ribonuclease, Rne/Rng family protein; COG: COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog; Psort location: Cytoplasmic, score: 8.87.
 
     0.756
EDS06206.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.744
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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