Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05644.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
EDS05645.1
IS66 family element, Orf2 protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.817
EDS07883.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.678
EDS07224.1
Transposase, IS4 family; COG: COG3666 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
  
     0.674
EDS07763.1
Hypothetical protein; COG: NOG27907 non supervised orthologous group.
  
     0.512
EDS05643.1
Hypothetical protein.
       0.486
EDS05642.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.466
EDS06822.1
GBS Bsp-like repeat protein; COG: NOG18564 non supervised orthologous group.
  
     0.444
EDS08613.1
Hypothetical protein; COG: NOG39007 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.404
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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