close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NatA_4KEGG: afu:AF1021 5.2e-32 ABC transporter, ATP-binding protein K02017; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (236 aa)    
Predicted Functional Partners:
EDS05655.1
Hypothetical protein; COG: NOG16845 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
EDS05654.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
       0.675
albA
Radical SAM domain protein; KEGG: mja:MJ1227 1.2e-05 act; pyruvate formate-lyase activating enzyme K04069; COG: COG0535 Predicted Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 8.87.
  
    0.673
yknY_2
KEGG: fal:FRAAL5379 2.8e-40 ABC transporter ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.610
ytrA_2
KEGG: bcz:BCZK3833 1.8e-13 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.507
ytrA_3
KEGG: bcz:BCZK3833 5.5e-12 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.497
EDS08484.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.472
EDS05168.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.442
EDS05229.1
Hypothetical protein; KEGG: lsl:LSL_1527 0.0054 O-acetyl transferase K00680; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.442
EDS04857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
  
 
 0.437
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.