STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lanMType 2 lantibiotic biosynthesis protein LanM; COG: COG4403 Lantibiotic modifying enzyme; Psort location: Cytoplasmic, score: 8.87. (727 aa)    
Predicted Functional Partners:
EDS05658.1
Hypothetical protein; COG: COG4403 Lantibiotic modifying enzyme.
      0.926
EDS07283.1
Hypothetical protein; COG: COG3694 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.614
XerD_7
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.528
EDS05660.1
Integrase core domain protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.523
EDS05661.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
       0.523
appA_2
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 8.1e-10 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Extracellular, score: 8.61.
  
    0.493
EDS05726.1
Plasmid recombination enzyme; KEGG: pho:PH0134 1.1e-07 hypothetical protein K01079; COG: COG5022 Myosin heavy chain; Psort location: Cytoplasmic, score: 8.87.
  
    0.482
EDS07284.1
Hypothetical protein; COG: COG4587 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.465
EDS06432.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.454
EDS05144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.452
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.