STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panTCOG: COG4684 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (218 aa)    
Predicted Functional Partners:
ecfT_1
Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.808
ecfA2_1
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.786
ecfT_2
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.781
ykoC
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.781
ecfT_3
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.781
ecfA1_1
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.772
ecfA2_2
KEGG: ser:SERP2358 1.3e-26 amino acid ABC transporter, ATP-binding protein K02000; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.741
ecfA1_3
ABC transporter, ATP-binding protein; KEGG: nma:NMA0842 2.0e-32 fbpC; iron transport system ATP-binding protein K02010; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.741
cbiO
Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
   
 
 0.741
cbiQ
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.678
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (40%) [HD]