STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05549.1Hypothetical protein; COG: COG4974 Site-specific recombinase XerD. (85 aa)    
Predicted Functional Partners:
EDS07891.1
DNA binding domain of tn916 integrase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
 
     0.873
EDS07890.1
Excisionase from transposon Tn916.
 
   
 0.785
EDS07892.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
  
     0.774
EDS05548.1
Hypothetical protein.
       0.773
EDS06977.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group.
  
    0.753
EDS05598.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.585
EDS05550.1
Hypothetical protein.
       0.563
EDS06222.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA2762 1.7e-05 boxR; putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain K00891; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.554
FliA
KEGG: bcz:BCZK3297 0.00052 RNA polymerase ECF-type sigma factor K03088; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.526
EDS08759.1
Sigma-70, region 4; KEGG: bcz:BCZK3297 0.00015 RNA polymerase ECF-type sigma factor K03088; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.522
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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