STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05537.1Hypothetical protein; KEGG: ecj:JW0278 1.2e-78 yagR; predicted oxidoreductase with molybdenum-binding domain K00087; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs. (153 aa)    
Predicted Functional Partners:
EDS05536.1
Hypothetical protein; KEGG: ecj:JW0278 2.3e-102 yagR; predicted oxidoreductase with molybdenum-binding domain K00087; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
     0.986
ndhF
KEGG: mta:Moth_1959 1.1e-70 molybdopterin dehydrogenase, FAD-binding K00087; COG: COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.967
cdhC
2Fe-2S iron-sulfur cluster-binding domain protein; KEGG: aha:AHA_2179 4.7e-38 carbon monoxide dehydrogenase small chain K00190; COG: COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.958
PucA
KEGG: aci:ACIAD2466 2.7e-18 putative xanthine dehydrogenase protein; putative xanthine dehydrogenase accessory factor (XdhC) K00087; COG: COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.815
pucD
Selenium-dependent molybdenum hydroxylase 1; KEGG: rde:RD1_1533 8.1e-98 mop; aldehyde oxidoreductase, putative K00157; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
0.784
mobA_3
Selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: hma:pNG7236 2.8e-14 glmU; UDP-N-acetylglucosamine pyrophosphorylase K00972; COG: COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.621
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.465
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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