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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05485.1Integrase core domain protein; COG: COG2801 Transposase and inactivated derivatives. (302 aa)    
Predicted Functional Partners:
EDS05484.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.905
EDS06341.1
Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives.
  
     0.771
EDS05905.1
Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
  
     0.764
EDS05486.1
Hypothetical protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
       0.705
EDS05961.1
Transposase; COG: COG2963 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.696
EDS06340.1
Transposase; COG: COG2963 Transposase and inactivated derivatives.
 
  
 0.663
EDS06076.1
Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives.
  
     0.533
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.