STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05488.1Hypothetical protein; KEGG: hhe:HH1444 5.8e-19 guaA; guanosine monophosphate synthetase GuaA K01951; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (171 aa)    
Predicted Functional Partners:
EDS05490.1
KEGG: bca:BCE_3047 1.6e-05 glyoxalase family protein K01759; COG: COG0346 Lactoylglutathione lyase and related lyases.
  
  
 0.778
EDS05487.1
Hydrolase, carbon-nitrogen family; KEGG: bur:Bcep18194_A4513 0.0037 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01950; COG: COG0388 Predicted amidohydrolase.
       0.776
pgsA_2
CDP-alcohol phosphatidyltransferase; KEGG: pmi:PMT9312_0806 1.5e-11 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995; COG: NOG21728 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.776
tag
KEGG: pha:PSHAa0788 4.5e-42 tag; 3-methyl-adenine DNA glycosylase I K01246; COG: COG2818 3-methyladenine DNA glycosylase; Psort location: Cytoplasmic, score: 8.87.
       0.663
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.526
ydaF
Acetyltransferase, GNAT family; KEGG: bth:BT4506 9.0e-24 putative acetyltransferase K03827; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.507
EDS05492.1
Fic family protein; COG: COG2184 Protein involved in cell division; Psort location: Cytoplasmic, score: 8.87.
 
     0.441
EDS05486.1
Hypothetical protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
  
    0.432
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.407
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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