STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinJAddiction module antitoxin, RelB/DinJ family; COG: COG3077 DNA-damage-inducible protein J. (101 aa)    
Predicted Functional Partners:
EDS05496.1
Toxin-antitoxin system, toxin component, RelE family.
 
     0.949
EDS07027.1
Addiction module antitoxin, RelB/DinJ family; COG: COG3077 DNA-damage-inducible protein J.
  
     0.601
EDS05494.1
Transcriptional regulator, AbrB family; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 8.87.
 
     0.527
resE_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bcz:BCZK0907 6.0e-31 sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.83.
  
     0.492
EDS08521.1
Hypothetical protein; COG: NOG19949 non supervised orthologous group.
 
    0.415
EDS06701.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.401
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.