STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05497.1Hypothetical protein; COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87. (187 aa)    
Predicted Functional Partners:
EDS08673.1
HNH endonuclease domain protein; KEGG: eci:UTI89_C2987 9.0e-12 hypothetical protein K01157; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87; ORF located using Blastx.
 
  
 0.839
EDS08659.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.789
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.782
EDS07390.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein.
 
   
 0.780
EDS08656.1
Hypothetical protein; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
 
     0.770
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.760
clpP
KEGG: bca:BCE_0399 2.9e-54 clpP; ClpP protease family protein K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 9.65; Belongs to the peptidase S14 family.
 
     0.751
EDS08240.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
  
     0.746
EDS08669.1
Hypothetical protein; COG: NOG36032 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.744
yhdJ_3
DNA (cytosine-5-)-methyltransferase; KEGG: spa:M6_Spy1144 5.6e-106 adenine-specific methyltransferase K00571; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.728
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.