STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SipW_2Signal peptidase I; KEGG: cpr:CPR_2281 1.3e-21 sipW; signal peptidase I K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.75. (162 aa)    
Predicted Functional Partners:
SipW_1
KEGG: cpr:CPR_0480 6.3e-20 peptidase, putative K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.75.
  
  
 
0.917
EDS05523.1
Hypothetical protein.
  
    0.799
EDS05524.1
Hypothetical protein; Psort location: Cellwall, score: 9.98.
       0.796
mscL-2
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.709
EDS05526.1
Hypothetical protein.
       0.685
EDS05521.1
Hypothetical protein.
  
    0.647
EDS05527.1
Hypothetical protein.
       0.603
EDS05528.1
Hypothetical protein; KEGG: cac:CAC3375 7.7e-14 alcohol dehydrogenase K00001:K00121; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
       0.576
EDS05520.1
Hypothetical protein.
  
    0.511
EDS05519.1
Hypothetical protein.
  
    0.506
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.