Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05531.1Hypothetical protein; COG: NOG06115 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (299 aa)    
Predicted Functional Partners:
EDS05532.1
Hypothetical protein; KEGG: dme:Dmel_CG15021 0.0090 CG15021 K04707; COG: NOG38544 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.935
EDS06140.1
Hypothetical protein; COG: NOG24928 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.639
EDS05533.1
Hypothetical protein.
       0.566
WcaJ
KEGG: tcx:Tcr_1675 1.8e-70 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.419
mtrA_2
Response regulator receiver domain protein; KEGG: ava:Ava_1878 6.1e-38 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.405
EDS05535.1
Hypothetical protein; KEGG: ctc:CTC01918 3.0e-07 resE; sensor protein ResE; COG: COG0642 Signal transduction histidine kinase.
       0.405
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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