STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05532.1Hypothetical protein; KEGG: dme:Dmel_CG15021 0.0090 CG15021 K04707; COG: NOG38544 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (370 aa)    
Predicted Functional Partners:
EDS05531.1
Hypothetical protein; COG: NOG06115 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.943
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tma:TM1359 1.6e-21 sensor histidine kinase K02486; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.738
EDS07069.1
Hypothetical protein; COG: NOG13222 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.577
EDS05533.1
Hypothetical protein.
       0.566
EDS06742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.560
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
  
     0.517
EDS04858.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.485
EDS07477.1
HD domain protein; KEGG: ava:Ava_1777 4.6e-26 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG0784 FOG: CheY-like receiver; Psort location: Cytoplasmic, score: 8.87.
  
     0.484
NatB
Hypothetical protein; COG: COG1668 ABC-type Na+ efflux pump, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.456
EDS06033.1
Hypothetical protein; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
     0.453
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.