Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnrCMethyltransferase domain protein; KEGG: hsa:57412 1.3e-65 AS3MT; arsenic (+3 oxidation state) methyltransferase K07755; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; Psort location: Cytoplasmic, score: 8.87. (423 aa)    
Predicted Functional Partners:
EDS07337.1
Hypothetical protein; COG: NOG31153 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
      0.880
EDS05396.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.811
ureG
CobW/P47K family protein; KEGG: reh:H16_A3373 3.9e-07 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
 
     0.803
EDS06093.1
Hypothetical protein; COG: COG0535 Predicted Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 8.87.
     0.728
cofC
Glycosyltransferase, group 2 family protein; KEGG: sat:SYN_00376 5.1e-20 glycosyltransferase involved in cell wall biogenesis; COG: NOG10066 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.614
EDS05395.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.572
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.439
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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