STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureGCobW/P47K family protein; KEGG: reh:H16_A3373 3.9e-07 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87. (365 aa)    
Predicted Functional Partners:
EDS05396.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.883
dnrC
Methyltransferase domain protein; KEGG: hsa:57412 1.3e-65 AS3MT; arsenic (+3 oxidation state) methyltransferase K07755; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; Psort location: Cytoplasmic, score: 8.87.
 
     0.804
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.590
yjiA
CobW/P47K family protein; KEGG: reh:H16_A3373 7.8e-18 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
  
     0.587
EDS05395.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.572
cobK
precorrin-6A reductase; KEGG: ctc:CTC00734 5.1e-57 cbiT; precorrin-6B methylase/decarboxylase cbiT/cbiE K03399:K02191; COG: COG2241 Precorrin-6B methylase 1; Psort location: Cytoplasmic, score: 8.87.
     
 0.419
rpmG
COG: COG0267 Ribosomal protein L33; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.417
hisE
phosphoribosyl-ATP diphosphatase; KEGG: sao:SAOUHSC_03008 3.6e-56 imidazole glycerol phosphate synthase subunit HisF, putative K01663; COG: COG0139 Phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the PRA-PH family.
     
 0.408
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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