STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuC_1KEGG: rha:RHA1_ro08170 4.0e-18 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (267 aa)    
Predicted Functional Partners:
ssuA
NMT1/THI5-like protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.967
tauB
ABC transporter, ATP-binding protein; KEGG: mja:MJ0412 1.4e-47 tauB; putative taurine transport system ATP-binding protein K02049; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.963
ssuB
ABC transporter, ATP-binding protein; KEGG: mja:MJ0412 8.8e-53 tauB; putative taurine transport system ATP-binding protein K02049; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.847
bioB_1
Radical SAM domain protein; KEGG: aae:aq_975 5.8e-09 bioB; biotin synthetase K01012; COG: COG0502 Biotin synthase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
 
     0.769
tauA
NMT1/THI5-like protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.760
fbpC
KEGG: reh:H16_A2382 1.1e-45 ABC-type transporter, ATPase component: NitT family; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.756
ssuC_3
KEGG: rha:RHA1_ro08170 1.2e-18 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.751
ahpD_1
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.718
EDS05404.1
Radical SAM domain protein; COG: COG0535 Predicted Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 8.87.
       0.718
EDS05405.1
Oxidoreductase; COG: NOG16874 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.685
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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