STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05406.1ABC transporter, solute-binding protein; COG: COG4134 ABC-type uncharacterized transport system, periplasmic component. (412 aa)    
Predicted Functional Partners:
potH
KEGG: ava:Ava_0243 2.1e-08 molybdate ABC transporter, permease protein K02018; COG: COG1176 ABC-type spermidine/putrescine transport system, permease component I; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.995
phnV
KEGG: ava:Ava_0243 1.3e-08 molybdate ABC transporter, permease protein K02018; COG: COG1177 ABC-type spermidine/putrescine transport system, permease component II; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.995
cysA
ABC transporter, ATP-binding protein; KEGG: sme:SMc01965 3.3e-53 putative spermidine/putrescine transport ATP-binding ABC transporter protein K02052; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
  0.974
rihB
KEGG: efa:EF2587 2.6e-12 inosine-uridine preferring nucleoside hydrolase K01239; COG: COG1957 Inosine-uridine nucleoside N-ribohydrolase; Psort location: Cytoplasmic, score: 8.87.
 
     0.859
EDS05398.1
Hypothetical protein; KEGG: sat:SYN_00363 2.6e-20 glutamate synthase [NADPH] small chain K00264; COG: COG0247 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
 
     0.841
EDS06092.1
Phosphotransferase enzyme family; KEGG: ehi:1.t00095 0.0058 choline/ethanolamine kinase, putative K00894; COG: NOG22933 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.766
EDS05405.1
Oxidoreductase; COG: NOG16874 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.753
YdjZ_2
SNARE-like domain protein; KEGG: hch:HCH_01003 6.6e-14 probable mercuric reductase K00520; COG: COG0398 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.737
EDS05411.1
Rhodanese-like protein; KEGG: cyb:CYB_2710 1.0e-33 rhdA; thiosulfate sulfurtransferase K01010; COG: COG2897 Rhodanese-related sulfurtransferase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.710
ydjZ_1
SNARE-like domain protein; KEGG: pat:Patl_0395 1.8e-17 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00520; COG: COG0398 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.708
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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