Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05418.1Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (229 aa)    
Predicted Functional Partners:
EDS05417.1
Hypothetical protein; KEGG: shn:Shewana3_3829 0.0029 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
   
   0.783
pcrA_1
Putative TIGR00375 family protein; KEGG: mta:Moth_0254 3.0e-233 UvrD/REP helicase K01529; COG: COG1379 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.780
EDS05416.1
Hypothetical protein.
       0.773
Fda_1
KEGG: sab:SAB2479 1.1e-17 fda; fructose-bisphosphate aldolase class I K01623; COG: COG3588 Fructose-1,6-bisphosphate aldolase.
       0.723
fliU
Hypothetical protein; KEGG: sec:SC1961 1.6e-10 fliB; N-methylation of lysine residues in flagellin K00599; COG: NOG18602 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.562
EDS07076.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.554
Fda_2
Putative fructose-1,6-bisphosphate aldolase; KEGG: tde:TDE0340 4.5e-49 fructose-bisphosphate aldolase, class-I K01623; COG: COG3588 Fructose-1,6-bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87.
       0.534
yneA
LysM domain protein; KEGG: oih:OB0220 0.00089 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448.
 
     0.528
EDS08153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.516
EDS07769.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
  
     0.505
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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